Regulation, IP, and PVP
- Regulating Breeding-Merging Technology and Technocrats
- UPOV Plant Variety Protection
- Requirements for Soybean Breeding Programs due to IP rights
- Trends in Intellectual Property Protection in Plant Breeding
- IP Learning Curve: On the Job or Graduate Curricula?
- Findings from the Summit on IPR and Public Plant Breeding
- How to Investigate Breeding Priorities Using Socioeconomic Methods Part 1
- How to Investigate Breeding Priorities Using Socioeconomic Methods Part 2
- How to Investigate Breeding Priorities Using Socioeconomic Methods Part 3
Data Base Software
Field Designs
- JMP Split Plot PCA: “How to Series”
- How to Design and Analyze Experiments Using an Augmented Design
- Introduction to the Augmented Experimental Design Part 1
- Introduction to the Augmented Experimental Design Part 2
- Introduction to the Augmented Experimental Design Part 3
- Introduction to the Augmented Experimental Design Part 4
- Introduction to the Augmented Experimental Design Part 5
- Introduction to the Augmented Experimental Design Part 6
- Introduction to the Augmented Experimental Design Part 7
- Introduction to the Augmented Experimental Design Part 8
- Augmented Design Part 1
- Augmented Design Part 2
- Lattice Design Part 1
- Lattice Design Part 2
- Lattice Design Part 3
- Lattice Design Part 4
- ANOVA and Summary Statistics Part 1
- ANOVA and Summary Statistics Part 2
- ANOVA and Summary Statistics Part 3
- ANOVA and Summary Statistics Part 4
- Lattice Designs Webinar
- Lattice Designs Webinar Part 1
- Lattice Designs Webinar Part 2
Molecular Genetics and Techniques
- Bioinformatics
- Transcriptome Data
- Breeding in a Genomics Era
- Sequencing
- Selective Sequencing Through Combinatorial Pooling
- Selective Sequencing Through Combinatorial Pooling Part 1
- Selective Sequencing Through Combinatorial Pooling Part 2
- Selective Sequencing Through Combinatorial Pooling Part 3
- Selective Sequencing Through Combinatorial Pooling Part 4
- How to Align Sequences Webinar
- How to Align Sequences Webinar Part 1: Intro and NCBI Overview
- How to Align Sequences Webinar Part 2: BLAST for Sequence Alignment
- How to Align Sequences Webinar Part 3: Pairwise Comparisons
- How to Align Sequences Webinar Part 4: Whole Genome and Short Sequence Alignment
- How to Align Sequences Webinar Part 5: Next Gen Sequencing Platforms
- How to Align Sequences Webinar Part 6: High-Throughput Sequencing Alignment
- How to Align Sequences Webinar Part 7: Additional Resources plus Q and A
- Introduction and Sequencing the Potato Genome
- Obtaining Potato Genome Sequence and Using Genome Browser
- Developing the Breeder’s Toolbox at SGN
- Potato Genomics: What’s Next?
- Sol Genomics Network Marker Search Tutorial
- Software for Downstream Analysis with SNP Markers
- Bead Express Arrays and How They Work
- Converting Sequence to SNPs
- Working with Infinium Genotyping Data Introduction
- Bead Infinium Tomato Array
- Refining Clusters in Genome Studio
- Working with Samples Individually in Genome Studio
- Genome Studio-Getting Started
- Working with SNPs in the Genome Studio
- Exporting SNP Statistics and Genotypes from Genome Studio
- Sequencing Resources-Sol Genomics Network SGN
- Sequencing Resources-Harvard Gene Index Project
- Sequencing Resources-TAIR
- Sequencing Resources-SWISS-PROT
- Sequencing Resources-GenBank
- Sequencing Resources-Intro
- Sequencing Resources-Downloading Customized Sequencing Data for Marker Discovery with NCBI
- Sequencing Resources-SolCAP Website
- Next Generation Sequencing Part 2: What Part of the DNA to Sequence
- Next Generation Sequencing Part 1: How to Sequence
- QTL Mapping
- Marker-Trait Analysis Part 1 (Data Merging)
- Marker-Trait Analysis Part 2 (ANOVA)
- Marker-Trait Analysis Part 3 (Loop Programming in R)
- Using SolCAP SNPs to Map QTL for Calcium and Tuber Quality
- TetraploidMap and SolCAP SNPs for QTL Analysis in Potato: A New User's Experience
- What to do when your SNP Data Set Arrives: A Case Study
- Linkage Analysis and QTL Mapping in Tetraploids
- How to Map Thousands of SNPs Webinar
- Introduction to How to Map Thousands of SNPs
- Using MadMapper when Mapping Thousands of SNPs
- Using RECORD when Mapping Thousands of SNPs
- Using Check Matrix when Mapping Thousands of SNPs
- Summary and Discussion for How to Map Thousands SNPs
- How to Develop SNP-based Tetraploid Maps for Potato
- Introduction and Review of Resources for Diploid Mapping
- Resources Used to Develop and Tetraploid Map
- Calling SNPs using Genome Studio Software
- Filtering SNPs and Tetraploid Segregation and SNP Distribution in Potato
- Single Marker ANOVA in Premier Russet and Rio Grande Russet
- Genetic Mapping and QTL Analysis using TetraploidMap Software
- Summary and Discussion for How to Develop SNP-Based Tetraploid Maps for Potato
- Module 8: Genetic Mapping- Conifer Translational Genomics Network
- Module 9: Mapping Quantitative Trait Loci (QTL)-CTGN
- Module 10: Linkage Disequilibrium- Conifer Translational Genomics Network
- SNP-Based Genetic Linkage and QTL Analysis
- SNP-Based Genetic Linkage Maps for Potato Part 1
- SNP-Based Genetic Linkage Maps for Potato Part 2
- SNP-Based Genetic Linkage Maps for Potato Part 3
- SNP-Based Genetic Linkage Maps for Potato Part 4
- SNP-Based Genetic Linkage Maps for Potato Part 5
- SNP-Based Genetic Linkage Maps for Potato Part 6
- Genome-Wide Association
- NAPB Genetic Architecture Webinar: Dr. Alex Lipka
- GAPIT
- GAPIT Part 1
- GAPIT Part 2
- GAPIT Part 3
- GWAS on your Notebook: Semi-parallel Linear Regression
- GWAS on your Notebook: Semi-parallel Linear Regression Part 1
- GWAS on your Notebook: Semi-parallel Linear Regression Part 2
- GWAS on your Notebook: Semi-parallel Linear Regression Part 3
- Module 11: Association Genetics-Conifer Translational Genomics Network
- Genomic Selection
- Prediction Using Genome-Wide Selection Models
- Genome Wide Selection with rrBLUP Part 1
- Genome Wide Selection with rrBLUP Part 2
- Genome Wide Selection with rrBLUP Part 3
- Genomic Relationships and GBLUP
- Genomic Relationships and GBLUP Part 1
- Genomic Relationships and GBLUP Part 2
- Genomic Relationships and GBLUP Part 3
- rrBLUP
- rrBLUP Part 1
- rrBLUP Part 2
- rrBLUP Part 3
- rrBLUP Part 4
- Module 14- Using Markers to Predict Breeding Values
- Module 15-Genomic Selection
- Genetic Markers and Marker-Assisted Selection
- Double Haploids
Genetic Analysis
- A Century of Potato Breeding: Improvement, Diversification, and Diversity
- Working with the Potato Genome
- Working with Infinium Data
- Module 1: Introduction-CTGN
- Module 2: Genes, Genomes, and Mendel-CTGN
- Population Structure
- Population Genetics
- Quantitative Genetics
Phenotyping
- Barcode based Digital Data Collection for Vegetable Breeding Part 1
- Barcode based Digital Data Collection for Vegetable Breeding Part 2
- Barcode based Digital Data Collection for Vegetable Breeding Part 3
- Phenotyping the SolCAP Potato Germplasm Panel
- Phenotypic Adjustments
- High-Throughput Phenotyping
- High Resolution Drone Imagery for High Throughput Plant Phenotyping
- Field Phenomics: Data Analysis
- Field Phenomics: Data Analysis Part 1
- Field Phenomics: Data Analysis Part 2
- Field Phenomics: Data Analysis Part 3
- Field Phenomics: Developing and Using a Sensor Array
- Field Phenomics: Developing and Using a Sensor Array Part 1
- Field Phenomics: Developing and Using a Sensor Array Part 2
- Field Phenomics: Developing and Using a Sensor Array Part 3
Diseases
Breeding Programs
- How to Breed for Organic Production Systems
- Carrot
- Peanut
- Soybean
- Maize
- Sugar Beet
- Flowers
- Raspberry
- Cotton
- Peppers
- Breeding Peppers Part 1
- Breeding Peppers Part 2
- Dry Bean Part 1
- Dry Bean Part 2
- Dry Bean
- Apple Part 1
- Apple Part 2
- Apple Part 3
- Apple
- Quinoa
- Quinoa Part 1
- Quinoa Part 2
- Quinoa Part 3
- Potato
- Potato Part 1
- Potato Part 2
- Potato Part 3
- Cucurbit
- Cucurbit Part 1
- Cucurbit Part 2
- Snap Pea
- Snap Pea Part 1
- Snap Pea Part 2
- Snap Pea Part 3
- Strawberry
- Strawberry Part 1
- Strawberry Part 2
- Strawberry Part 3
- Cassava
- Module 5: Introduction to Tree Breeding and Provenance Trials-CTGN