Data Analysis

R

• Software
  • R
  • R Studio (IDE)
• Books
  • The R Book by Michael J. Crawley
  • A Handbook of Statistical Analyses using R byTorsten Hothorn
  • R Graphics Cookbook by Winston Chang
  • An Introduction to Statistical Learning: with Applications in R by Gareth James
  • Advanced-Data Analysis from an Elementary Point of View by Cosma Rohilla Shalizi
  • Applied Predictive Modeling by Max Kuhn
• Guides
  • Data Visualization in R
  • R for Data Science
  • Caret
• Webinars
  • R for Plant Breeders-Intro to R Workshop
  • Introduction to R
  • Introduction to R Part 1
  • Introduction to R Part 2
  • Introduction to R Part 3
  • Introduction to R Part 4
  • Introduction to R Part 5
  • Introduction to R Part 6
  • Introduction to R Part 7

Python

• Software
  • Python
  • Jupyter (IDE)
  • Spyder (IDE)
  • Anaconda (IDE)
  • Sci-kit Learn (Machine Learning)
• Books
  • Python for Data Analysis by Wes McKinney
• Guides
  • Python For Beginners
  • The Hitchiker’s Guide to Python
  • The Ultimate Python Beginner’s Handbook

 SAS/JMP/JMP Genomics

• Books
• Guides
  • SAS Enterprise Guide
  • SAS Tutorial for Beginners to Advanced-Practical Guide
• Webinars
  • JMP Genomics-“How to Series”

Github or Forum

• Depository for sharing code
• Allow grad students to help each other out